Basic Information
Locus ID:
gene:TRIDC3BG086810
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein modification by small protein conjugation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 835176160 | 835177639 | + | gene:TRIDC3BG086810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 49,052.08 Da | 48.10 | 83.06 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 196 | 221 | 1.5E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 17 | 110 | 8.4E-13 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 113 | 183 | 1.4E-11 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 16 | 251 | 7.29E-49 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 380 | 1.88E-6 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 111 | 192 | 1.6E-18 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 193 | 257 | 2.5E-12 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 110 | 5.9E-20 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 385 | 1.3E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 158 | 187 | 1.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 79 | 108 | 6.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 195 | 225 | 0.24 | IPR002110 |
| SMART | SM00248 | ANK_2a | 11 | 40 | 2600.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 113 | 142 | 0.039 | IPR002110 |
| SMART | SM00248 | ANK_2a | 46 | 75 | 4.3 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 79 | 111 | 10.95327 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 158 | 190 | 13.00994 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 158 | 183 | 12.381428 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 46 | 78 | 9.217119 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 375 | 9.730467 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 195 | 227 | 11.99496 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 79 | 106 | 9.807884 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 195 | 221 | 11.107922 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 435 | - | - |
| Coils | Coil | Coil | 273 | 293 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28840.1 | XB3 ortholog 1 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_037416303.1 | E3 ubiquitin-protein ligase XB3-like [Triticum dicoccoides] | 0 |
| Q65XV2 | E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica OX=39947 GN=XB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A080YUU5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF066000110CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG086810.