Basic Information
Locus ID:
gene:TRIDC3BG085980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 831502719 | 831506159 | + | gene:TRIDC3BG085980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 51,691.42 Da | 46.58 | 71.44 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 197 | 456 | 6.34294E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 326 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 371 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 456 | 1.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 160 | 457 | 3.98E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 121 | 458 | 4.1E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 414 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 371 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 456 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 200 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 283 | 5.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 457 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 294 | 326 | 11.075592 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 424 | 457 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 335 | 14.084198 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 443 | 457 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 162 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_020198802.1 | protein FIZZY-RELATED 3 [Aegilops tauschii subsp. strangulata] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6H456 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG085980.