Basic Information
Locus ID:
gene:TRIDC3BG085450
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 828902880 | 828909100 | + | gene:TRIDC3BG085450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 90,692.30 Da | 43.05 | 93.39 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 240 | 282 | 3.61051E-22 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 586 | 623 | 1.7E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 625 | 664 | 8.3E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 668 | 705 | 1.5E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 236 | 307 | 2.0E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 313 | 1.06E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 552 | 827 | 1.01E-46 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 309 | 1.0E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 540 | 835 | 2.0E-58 | IPR011989 |
| SMART | SM00185 | arm_5 | 707 | 746 | 2.3 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 239 | 302 | 1.1E-28 | IPR003613 |
| SMART | SM00185 | arm_5 | 789 | 829 | 410.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 584 | 624 | 3.5E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 666 | 706 | 0.23 | IPR000225 |
| SMART | SM00185 | arm_5 | 747 | 787 | 2.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 625 | 665 | 0.2 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 677 | 719 | 9.3624 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 718 | 759 | 8.8024 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 235 | 309 | 41.762314 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 595 | 637 | 12.7574 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 467 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23140.2 | RING/U-box superfamily protein with ARM repeat domain. | 0 |
| RefSeq | XP_037416190.1 | U-box domain-containing protein 4-like isoform X1 [Triticum dicoccoides] | 0 |
| O22193 | U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A077RF03 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF151900020CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG085450.