Basic Information
Locus ID:
gene:TRIDC3BG078800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
CW-type Zinc Finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 793716679 | 793722634 | - | gene:TRIDC3BG078800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 143,297.41 Da | 50.58 | 83.61 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1111 | 1220 | 4.35961E-27 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 656 | 856 | 2.43639E-42 | - |
| CDD | cd16449 | RING-HC | 978 | 1012 | 6.75824E-5 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 277 | 898 | 2.3E-105 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1114 | 1210 | 2.2E-8 | IPR001650 |
| Pfam | PF07496 | CW-type Zinc Finger | 502 | 545 | 4.5E-13 | IPR011124 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 264 | 355 | 3.99E-7 | IPR027417 |
| SUPERFAMILY | SSF81383 | F-box domain | 224 | 265 | 5.63E-6 | IPR036047 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 756 | 1244 | 7.27E-35 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 968 | 1016 | 1.58E-5 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 680 | 840 | 2.34E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1031 | 1271 | 5.5E-31 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 669 | 859 | 8.7E-24 | IPR038718 |
| Gene3D | G3DSA:3.30.40.100 | - | 493 | 548 | 6.9E-15 | - |
| SMART | SM00490 | helicmild6 | 1128 | 1210 | 1.5E-7 | IPR001650 |
| SMART | SM00487 | ultradead3 | 270 | 828 | 2.3E-11 | IPR014001 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 226 | 278 | 9.285514 | IPR001810 |
| ProSiteProfiles | PS51050 | Zinc finger CW-type profile. | 497 | 548 | 12.87751 | IPR011124 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1108 | 1248 | 9.866587 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 650 | 815 | 10.270163 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 993 | 1002 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 422 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54460.1 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein. | 0 |
| RefSeq | XP_037416994.1 | F-box protein At3g54460-like [Triticum dicoccoides] | 0 |
| Q9M1I1 | F-box protein At3g54460 OS=Arabidopsis thaliana OX=3702 GN=At3g54460 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6H664 | F-box protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG078800.