Basic Information
Locus ID:
gene:TRIDC3BG072040
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 749751598 | 749757145 | - | gene:TRIDC3BG072040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 51,059.86 Da | 55.72 | 75.14 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 341 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 390 | 0.029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 124 | 467 | 8.7E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 184 | 468 | 1.5E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 224 | 259 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 471 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 346 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 390 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 110 | 147 | 260.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.3 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_037415601.1 | autophagy-related protein 18a-like [Triticum dicoccoides] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A077S3X6 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF063600170CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG072040.