Basic Information
Locus ID:
gene:TRIDC3BG065980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 699543869 | 699548370 | - | gene:TRIDC3BG065980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 41,325.13 Da | 48.24 | 73.19 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 332 | 376 | 1.8745E-26 | - |
| Pfam | PF07002 | Copine | 55 | 269 | 6.7E-73 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 330 | 371 | 1.4E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 326 | 372 | 1.31E-6 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 32 | 214 | 3.6E-10 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 314 | 376 | 5.1E-12 | IPR013083 |
| SMART | SM00327 | VWA_4 | 30 | 233 | 4.1E-6 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 333 | 366 | 10.763177 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14420.1 | RING domain ligase2. | 0 |
| RefSeq | XP_037415267.1 | E3 ubiquitin-protein ligase RGLG2-like [Triticum dicoccoides] | 0 |
| Q9LY87 | E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FXW3 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG065980.