Basic Information
Locus ID:
gene:TRIDC3BG062870
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 675806291 | 675811006 | + | gene:TRIDC3BG062870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 85,931.53 Da | 46.61 | 83.38 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 281 | 323 | 1.9682E-26 | - |
| Pfam | PF04564 | U-box domain | 278 | 347 | 1.9E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 272 | 353 | 3.53E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 422 | 710 | 3.84E-27 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 427 | 565 | 5.0E-15 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 566 | 717 | 4.3E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 275 | 349 | 4.8E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 280 | 343 | 6.0E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 631 | 672 | 240.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 539 | 585 | 400.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 454 | 498 | 0.23 | IPR000225 |
| SMART | SM00185 | arm_5 | 500 | 538 | 34.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 465 | 511 | 9.1524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 276 | 350 | 43.106861 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 741 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27910.1 | plant U-box 45. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_037415068.1 | U-box domain-containing protein 45-like [Triticum dicoccoides] | 0 |
| Q9C7G1 | U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FTD1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG062870.