Basic Information
Locus ID:
gene:TRIDC3BG061710
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Interconversion of serine and glycine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 665451922 | 665456048 | + | gene:TRIDC3BG061710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 63,850.24 Da | 39.68 | 74.97 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00378 | SHMT | 135 | 548 | 0.0 | IPR001085 |
| Pfam | PF00464 | Serine hydroxymethyltransferase | 134 | 537 | 5.3E-170 | IPR039429 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 126 | 589 | 8.45E-167 | IPR015424 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 138 | 586 | 5.0E-194 | IPR015422 |
| Gene3D | G3DSA:3.40.640.10 | - | 163 | 442 | 5.0E-194 | IPR015421 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 478 | 8.570195 | IPR001680 |
| Hamap | MF_00051 | Serine hydroxymethyltransferase [glyA]. | 133 | 587 | 39.768242 | IPR001085 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 119 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00460 (Cyanoamino acid metabolism)
map00460 (Cyanoamino acid metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko00670 (One carbon pool by folate)
map00670 (One carbon pool by folate)
ko00680 (Methane metabolism)
map00680 (Methane metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
ko01523 (Antifolate resistance)
map01523 (Antifolate resistance)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G36370.1 | serine hydroxymethyltransferase 7. Encodes a putative serine hydroxymethyltransferase. | 0 |
| RefSeq | XP_037414996.1 | serine hydroxymethyltransferase 7-like [Triticum dicoccoides] | 0 |
| Q84WV0 | Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077RXQ5 | glycine hydroxymethyltransferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF043700120CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG061710.