HalophFGD

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Basic Information
Locus ID: gene:TRIDC3BG061710
Species & Taxonomic ID: Triticum dicoccoides & 85692
Genome Assembly: GCF_002162155.2
Description: Interconversion of serine and glycine
Maps and Mapping Data
Chromosome Start End Strand ID
3B 665451922 665456048 + gene:TRIDC3BG061710
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.90 63,850.24 Da 39.68 74.97 -0.36
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00378 SHMT 135 548 0.0 IPR001085
Pfam PF00464 Serine hydroxymethyltransferase 134 537 5.3E-170 IPR039429
SUPERFAMILY SSF53383 PLP-dependent transferases 126 589 8.45E-167 IPR015424
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 138 586 5.0E-194 IPR015422
Gene3D G3DSA:3.40.640.10 - 163 442 5.0E-194 IPR015421
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 462 478 8.570195 IPR001680
Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 133 587 39.768242 IPR001085
MobiDBLite mobidb-lite consensus disorder prediction 38 58 - -
MobiDBLite mobidb-lite consensus disorder prediction 100 119 - -
Gene Ontology
Biological Process:
GO:0019264 (glycine biosynthetic process from serine) GO:0035999 (tetrahydrofolate interconversion)
Molecular Function:
GO:0003824 (catalytic activity) GO:0004372 (glycine hydroxymethyltransferase activity) GO:0005515 (protein binding) GO:0030170 (pyridoxal phosphate binding)
KEGG Pathway
KO Term:
K00600 (glycine hydroxymethyltransferase [EC:2.1.2.1])
Pathway:
ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00460 (Cyanoamino acid metabolism) map00460 (Cyanoamino acid metabolism) ko00630 (Glyoxylate and dicarboxylate metabolism) map00630 (Glyoxylate and dicarboxylate metabolism) ko00670 (One carbon pool by folate) map00670 (One carbon pool by folate) ko00680 (Methane metabolism) map00680 (Methane metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids) ko01523 (Antifolate resistance) map01523 (Antifolate resistance)
Module:
M00140 (C1-unit interconversion, prokaryotes) M00141 (C1-unit interconversion, eukaryotes) M00346 (Formaldehyde assimilation, serine pathway) M00532 (Photorespiration)
Reaction:
R00945 (5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine) R09099 (L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G36370.1 serine hydroxymethyltransferase 7. Encodes a putative serine hydroxymethyltransferase. 0
RefSeq XP_037414996.1 serine hydroxymethyltransferase 7-like [Triticum dicoccoides] 0
Swiss-Prot Q84WV0 Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=1 SV=1 0
TrEMBL A0A077RXQ5 glycine hydroxymethyltransferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF043700120CFD_c1 PE=3 SV=1 0
Expression
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BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC3BG061710.

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