Basic Information
Locus ID:
gene:TRIDC3BG060720
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 656106880 | 656108118 | - | gene:TRIDC3BG060720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 43,928.44 Da | 52.37 | 109.90 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 64 | 6.4523E-19 | - |
| Pfam | PF04564 | U-box domain | 9 | 87 | 6.5E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 87 | 1.71E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 117 | 378 | 6.84E-20 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 91 | 2.7E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 107 | 233 | 2.3E-5 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 234 | 392 | 3.9E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 85 | 2.0E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 92 | 32.722008 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 276 | 319 | 9.7474 | IPR000225 |
| Coils | Coil | Coil | 125 | 145 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_037414909.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum dicoccoides] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077S584 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF019300250CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG060720.