Basic Information
Locus ID:
gene:TRIDC3BG060020
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 648186634 | 648196129 | - | gene:TRIDC3BG060020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 131,056.45 Da | 43.62 | 73.52 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 806 | 1051 | 4.16E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 508 | 997 | 4.9E-21 | IPR015943 |
| SMART | SM00384 | AT_hook_2 | 422 | 434 | 17.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 515 | 527 | 59.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 202 | 214 | 38.0 | IPR017956 |
| SMART | SM00320 | WD40_4 | 854 | 890 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 899 | 942 | 1.7 | IPR001680 |
| SMART | SM00384 | AT_hook_2 | 260 | 272 | 0.51 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 358 | 370 | 0.86 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 321 | 333 | 2.1 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 225 | 237 | 110.0 | IPR017956 |
| SMART | SM00320 | WD40_4 | 946 | 985 | 48.0 | IPR001680 |
| PRINTS | PR00929 | AT-hook-like domain signature | 356 | 367 | 3.3E-9 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 321 | 331 | 3.3E-9 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 420 | 430 | 3.3E-9 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 659 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19485.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037414856.1 | uncharacterized protein LOC119277669 isoform X1 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6FTK2 | General transcription factor 3C polypeptide 2 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG060020.