Basic Information
Locus ID:
gene:TRIDC3BG060000
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 648182263 | 648185397 | + | gene:TRIDC3BG060000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 50,646.32 Da | 50.12 | 70.86 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 389 | 425 | 2.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 182 | 219 | 3.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 338 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 100 | 132 | 0.28 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 432 | 1.7E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 428 | 3.6E-100 | IPR015943 |
| SMART | SM00320 | WD40_4 | 92 | 132 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 425 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 219 | 7.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 34 | 73 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 176 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 338 | 0.0046 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 186 | 221 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 425 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 347 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 141 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 306 | 342 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 434 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 186 | 221 | 12.513543 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 325 | 339 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 206 | 220 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 325 | 339 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 119 | 133 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 206 | 220 | 1.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 453 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27840.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity. | 0 |
| RefSeq | XP_037414854.1 | WD repeat-containing protein ATCSA-1-like isoform X1 [Triticum dicoccoides] | 0 |
| Q93ZG3 | WD repeat-containing protein ATCSA-1 OS=Arabidopsis thaliana OX=3702 GN=ATCSA-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FT15 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG060000.