Basic Information
Locus ID:
gene:TRIDC3BG059990
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Lysin motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 648176697 | 648179582 | + | gene:TRIDC3BG059990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 68,242.67 Da | 44.67 | 95.43 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 163 | 208 | 2.60423E-6 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 312 | 584 | 4.8E-49 | IPR000719 |
| Pfam | PF01476 | LysM domain | 165 | 209 | 1.7E-7 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 163 | 209 | 7.46E-7 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 293 | 587 | 1.56E-74 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 155 | 219 | 6.0E-12 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 291 | 382 | 1.3E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 383 | 600 | 9.7E-58 | - |
| SMART | SM00220 | serkin_6 | 311 | 587 | 1.9E-37 | IPR000719 |
| SMART | SM00257 | LysM_2 | 164 | 209 | 5.4E-5 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 587 | 40.060715 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 163 | 208 | 10.80005 | IPR018392 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 317 | 338 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 430 | 442 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51940.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_037414853.1 | lysM domain receptor-like kinase 3 [Triticum dicoccoides] | 0 |
| F4IB81 | LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=LYK3 PE=2 SV=1 | 0 | |
| TrEMBL | W5CQZ0 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF093200060CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG059990.