Basic Information
Locus ID:
gene:TRIDC3BG059760
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
HUB1
Description:
E3 ubiquitin-protein ligase BRE1-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 646095631 | 646108078 | - | gene:TRIDC3BG059760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 100,249.48 Da | 48.50 | 87.25 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16499 | RING-HC_BRE1_like | 820 | 861 | 1.20488E-18 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 821 | 861 | 6.7E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 815 | 873 | 7.66E-14 | - |
| SUPERFAMILY | SSF57997 | Tropomyosin | 571 | 789 | 1.34E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 804 | 874 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 822 | 860 | 4.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 822 | 860 | 11.66311 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 837 | 846 | - | IPR017907 |
| Coils | Coil | Coil | 234 | 261 | - | - |
| Coils | Coil | Coil | 737 | 757 | - | - |
| Coils | Coil | Coil | 360 | 380 | - | - |
| Coils | Coil | Coil | 206 | 226 | - | - |
| Coils | Coil | Coil | 590 | 617 | - | - |
| Coils | Coil | Coil | 632 | 652 | - | - |
| Coils | Coil | Coil | 779 | 799 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44950.1 | histone mono-ubiquitination 1. The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. | 0 |
| RefSeq | XP_037414829.1 | E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Triticum dicoccoides] | 0 |
| A2XW69 | E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=BRE1A PE=3 SV=2 | 0 | |
| TrEMBL | A0A077RWE7 | E3 ubiquitin protein ligase OS=Triticum aestivum OX=4565 GN=TRAES_3BF080100170CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG059760.