Basic Information
Locus ID:
gene:TRIDC3BG056660
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 610089288 | 610091468 | - | gene:TRIDC3BG056660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 60,313.28 Da | 72.95 | 67.38 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 225 | 269 | 1.14428E-28 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 226 | 267 | 1.0E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 273 | 8.52E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 281 | 1.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 227 | 267 | 4.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 227 | 268 | 13.581 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 242 | 251 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 78 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037414646.1 | uncharacterized protein LOC119277467 [Triticum dicoccoides] | 0 |
| O35445 | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1 | 0 | |
| TrEMBL | W5D5M0 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF030500050CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG056660.