Basic Information
Locus ID:
gene:TRIDC3BG056090
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 605245645 | 605247714 | - | gene:TRIDC3BG056090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 73,464.42 Da | 48.21 | 99.84 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 287 | 329 | 3.31076E-24 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 416 | 454 | 3.2E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 284 | 353 | 9.6E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 356 | 2.98E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 385 | 653 | 9.05E-27 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 356 | 2.4E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 357 | 667 | 1.9E-29 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 286 | 349 | 2.0E-30 | IPR003613 |
| SMART | SM00185 | arm_5 | 415 | 455 | 1.7E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 500 | 540 | 67.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 282 | 356 | 41.930386 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 426 | 468 | 13.1424 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 286 | - | - |
| Coils | Coil | Coil | 192 | 212 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01830.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037414606.1 | U-box domain-containing protein 16-like [Triticum dicoccoides] | 0 |
| Q9LZW3 | U-box domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUB16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A077S4W5 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF059400030CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG056090.