Basic Information
Locus ID:
gene:TRIDC3BG055100
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 593389458 | 593393222 | + | gene:TRIDC3BG055100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 23,494.97 Da | 54.25 | 50.19 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 160 | 202 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 209 | 6.36E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 212 | 1.3E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 162 | 202 | 2.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 162 | 202 | 11.751628 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 141 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15790.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037414553.1 | E3 ubiquitin-protein ligase At3g02290-like [Triticum dicoccoides] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 | |
| TrEMBL | W5D6D5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF012000020CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG055100.