Basic Information
Locus ID:
gene:TRIDC3BG052490
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 571917960 | 571925975 | + | gene:TRIDC3BG052490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 102,514.96 Da | 41.75 | 87.05 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 84 | 335 | 1.34685E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 124 | 161 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 167 | 203 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 287 | 1.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 245 | 9.8E-11 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 771 | 927 | 4.4E-45 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 82 | 368 | 6.8E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 210 | 340 | 1.0E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 74 | 209 | 3.8E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 164 | 203 | 1.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 328 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 287 | 6.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 245 | 2.6E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 79 | 119 | 0.0072 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 86 | 118 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 170 | 15.788527 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 296 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 213 | 250 | 14.054668 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 171 | 205 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 212 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 163 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 255 | 290 | 12.314676 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 86 | 128 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 213 | 254 | 18.161219 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 232 | 246 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 148 | 162 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 274 | 288 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 232 | 246 | 2.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 2.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 190 | 204 | 2.3E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 75 | 931 | 19.354469 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 483 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_037414353.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2-like isoform X1 [Triticum dicoccoides] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453FP23 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG052490.