Basic Information
Locus ID:
gene:TRIDC3BG052270
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 569531429 | 569539418 | - | gene:TRIDC3BG052270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 124,424.63 Da | 51.96 | 70.31 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1071 | 1127 | 9.2254E-17 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 500 | 821 | 3.4541E-86 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 517 | 899 | 4.8E-67 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 935 | 972 | 2.1E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 483 | 821 | 3.25E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 830 | 1121 | 1.25E-20 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 934 | 978 | 7.9E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 473 | 560 | 1.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 939 | 987 | 2.6E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 583 | 681 | 5.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1044 | 1127 | 9.9E-14 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 686 | 822 | 8.2E-27 | IPR038718 |
| Gene3D | G3DSA:1.20.120.850 | - | 848 | 938 | 5.4E-5 | - |
| SMART | SM00184 | ring_2 | 935 | 973 | 7.0E-6 | IPR001841 |
| SMART | SM00487 | ultradead3 | 496 | 791 | 4.4E-27 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 573 | 783 | 13.269253 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 935 | 974 | 10.763177 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 950 | 959 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 718 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_044350365.1 | helicase-like transcription factor CHR28 [Triticum aestivum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077S3V5 | DNA helicase OS=Triticum aestivum OX=4565 GN=TRAES_3BF060000120CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG052270.