Basic Information
Locus ID:
gene:TRIDC3BG047690
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 524572913 | 524578835 | - | gene:TRIDC3BG047690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 86,630.16 Da | 50.59 | 75.93 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 476 | 779 | 6.91495E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 646 | 678 | 0.032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 562 | 594 | 0.0015 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 38 | 249 | 5.61E-14 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 469 | 781 | 9.3E-53 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 37 | 253 | 5.6E-20 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 447 | 783 | 2.1E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 687 | 726 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 636 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 551 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 640 | 678 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 501 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 594 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 781 | 4.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 647 | 687 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 241 | 9.248596 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 647 | 683 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 561 | 603 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 518 | 560 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 561 | 596 | 9.810144 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 538 | 552 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 665 | 679 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 538 | 552 | 2.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 581 | 595 | 2.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 665 | 679 | 2.7E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| Coils | Coil | Coil | 244 | 274 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_037413995.1 | protein SPA1-RELATED 3-like isoform X1 [Triticum dicoccoides] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077S3N9 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF048900080CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG047690.