Basic Information
Locus ID:
gene:TRIDC3BG038680
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 424340098 | 424345577 | + | gene:TRIDC3BG038680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 39,777.28 Da | 39.32 | 62.72 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 47 | 73 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 292 | 0.065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 88 | 117 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 128 | 160 | 3.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 42 | 326 | 6.16E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 21 | 361 | 1.0E-113 | IPR015943 |
| SMART | SM00320 | WD40_4 | 248 | 292 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 80 | 118 | 6.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 199 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 35 | 74 | 4.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 121 | 160 | 6.2E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 128 | 169 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 86 | 127 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 128 | 162 | 12.341042 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 76 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 86 | 117 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 301 | 9.372231 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 105 | 119 | 2.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 147 | 161 | 2.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 61 | 75 | 2.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80670.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_037413296.1 | protein RAE1-like isoform X2 [Triticum dicoccoides] | 0 |
| Q38942 | Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A077S198 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF026100030CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG038680.