Basic Information
Locus ID:
gene:TRIDC3BG038210
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
CDPK6
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 418302692 | 418306813 | + | gene:TRIDC3BG038210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 58,407.71 Da | 43.19 | 79.86 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 66 | 323 | 2.9084E-131 | - |
| CDD | cd00051 | EFh | 372 | 431 | 2.24339E-18 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 66 | 324 | 1.5E-73 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 442 | 504 | 4.4E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 372 | 432 | 8.3E-13 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 65 | 335 | 8.36E-84 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 363 | 504 | 3.69E-46 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 68 | 151 | 1.7E-27 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 332 | 507 | 2.5E-60 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 152 | 331 | 9.8E-57 | - |
| SMART | SM00054 | efh_1 | 443 | 471 | 6.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 407 | 435 | 6.7E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 66 | 324 | 4.9E-99 | IPR000719 |
| SMART | SM00054 | efh_1 | 478 | 506 | 1.9E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 371 | 399 | 1.0E-5 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 66 | 324 | 47.989891 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 439 | 474 | 14.820255 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 367 | 402 | 14.876045 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 403 | 438 | 11.695971 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 475 | 509 | 12.560727 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 186 | 198 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 416 | 428 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 380 | 392 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 452 | 464 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 487 | 499 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 72 | 95 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23650.1 | calcium-dependent protein kinase 6. Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. | 0 |
| RefSeq | XP_037405944.1 | calcium-dependent protein kinase 1-like [Triticum dicoccoides] | 0 |
| A2ZVI7 | Calcium-dependent protein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK1 PE=2 SV=1 | 0 | |
| TrEMBL | Q6KCK6 | Putative calcium-dependent protein kinase OS=Triticum aestivum OX=4565 GN=cdpk1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG038210.