Basic Information
Locus ID:
gene:TRIDC3BG037060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 401122700 | 401134689 | - | gene:TRIDC3BG037060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 81,394.53 Da | 55.61 | 73.78 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 437 | 759 | 3.61574E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 441 | 467 | 4.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 637 | 668 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 510 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 554 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 434 | 759 | 1.37E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 410 | 574 | 1.4E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 585 | 759 | 4.3E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 471 | 510 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 554 | 7.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 634 | 672 | 0.041 | IPR001680 |
| SMART | SM00320 | WD40_4 | 720 | 759 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 468 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 592 | 630 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 717 | 0.24 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 521 | 559 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 563 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 478 | 519 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 436 | 467 | 8.518333 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 727 | 759 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 727 | 759 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 478 | 513 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 436 | 467 | 10.107432 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 497 | 511 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 289 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_044340495.1 | transcriptional corepressor LEUNIG-like isoform X1 [Triticum aestivum] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6FMX1 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG037060.