Basic Information
Locus ID:
gene:TRIDC3BG037030
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 400388397 | 400401863 | - | gene:TRIDC3BG037030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 95,072.71 Da | 55.93 | 64.52 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 579 | 867 | 6.14992E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 745 | 780 | 3.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 616 | 652 | 4.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 584 | 609 | 8.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 660 | 696 | 2.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 578 | 867 | 1.08E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 715 | 867 | 1.6E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 556 | 714 | 6.8E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 786 | 825 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 867 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 780 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 656 | 696 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 652 | 2.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 610 | 2.9E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 835 | 867 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 663 | 705 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 663 | 701 | 9.889235 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 620 | 661 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 620 | 655 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 578 | 609 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 835 | 867 | 10.441614 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 639 | 653 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 493 | - | - |
| Coils | Coil | Coil | 95 | 131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_037413157.1 | transcriptional corepressor LEUNIG-like isoform X2 [Triticum dicoccoides] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A077RWR3 | LisH domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF046700030CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG037030.