Basic Information
Locus ID:
gene:TRIDC3BG034330
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 357357365 | 357374891 | - | gene:TRIDC3BG034330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 126,554.29 Da | 53.40 | 65.74 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02892 | BED zinc finger | 60 | 104 | 6.1E-5 | IPR003656 |
| Pfam | PF00628 | PHD-finger | 1013 | 1059 | 4.5E-11 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 845 | 896 | 8.2E-9 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1012 | 1062 | 2.21E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 935 | 1012 | 2.88E-6 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 834 | 916 | 1.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 952 | 1064 | 2.1E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1013 | 1058 | 1.2E-8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 847 | 893 | 2.1E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 958 | 1012 | 0.016 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 956 | 1014 | 8.5021 | IPR019787 |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 54 | 110 | 11.091254 | IPR003656 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1010 | 1060 | 9.943899 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77250.1 | RING/FYVE/PHD-type zinc finger family protein. | 0 |
| RefSeq | XP_044348824.1 | uncharacterized protein LOC123069914 isoform X6 [Triticum aestivum] | 0 |
| Q6ZJM9 | PHD finger protein EHD3 OS=Oryza sativa subsp. japonica OX=39947 GN=EHD3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453EV15 | BED-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG034330.