Basic Information
Locus ID:
gene:TRIDC3BG033020
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Suppressor of mec-8 and unc-52 protein homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 316834975 | 316959332 | - | gene:TRIDC3BG033020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 61,478.42 Da | 46.17 | 77.98 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 256 | 548 | 4.12729E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 370 | 0.0016 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 45 | 74 | 1.5E-16 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 377 | 414 | 1.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 279 | 2.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 328 | 4.6E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 249 | 548 | 2.9E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 228 | 549 | 4.3E-72 | IPR015943 |
| SMART | SM00320 | WD40_4 | 239 | 279 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 462 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 372 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 329 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 548 | 0.084 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 506 | 21.0 | IPR001680 |
| SMART | SM00668 | ctlh | 78 | 130 | 3.1E-5 | IPR006595 |
| SMART | SM00667 | Lish | 44 | 76 | 0.001 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 44 | 76 | 9.516169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 78 | 130 | 10.038321 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 340 | 381 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 297 | 338 | 16.323217 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 288 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 516 | 549 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 516 | 549 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 382 | 423 | 15.253835 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 297 | 334 | 12.499222 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 382 | 417 | 11.602863 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 401 | 415 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 266 | 280 | 4.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 401 | 415 | 4.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 316 | 330 | 4.6E-6 | IPR020472 |
| Coils | Coil | Coil | 108 | 128 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73720.1 | transducin family protein / WD-40 repeat family protein. Encodes SMU1, a protein involved in RNA splicing. | 0 |
| RefSeq | XP_037412821.1 | suppressor of mec-8 and unc-52 protein homolog 1-like isoform X1 [Triticum dicoccoides] | 0 |
| Q8W117 | Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SMU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453ESF4 | WD40 repeat-containing protein SMU1 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG033020.