Basic Information
Locus ID:
gene:TRIDC3BG031280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 265613061 | 265614899 | - | gene:TRIDC3BG031280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 53,602.06 Da | 52.39 | 77.25 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 379 | 0.0078 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 433 | 0.0061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 281 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 104 | 434 | 7.78E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 285 | 440 | 6.0E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 284 | 3.5E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 243 | 282 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 434 | 4.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 240 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 135 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 380 | 8.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 334 | 2.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 281 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 348 | 379 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 208 | 249 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 379 | 11.343905 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 250 | 281 | 9.124694 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 367 | 381 | 2.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 269 | 283 | 2.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 227 | 241 | 2.7E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 458 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24130.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_020186966.1 | protein JINGUBANG [Aegilops tauschii subsp. strangulata] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FN36 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG031280.