Basic Information
Locus ID:
gene:TRIDC3BG031130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 263759731 | 263769976 | - | gene:TRIDC3BG031130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 148,413.64 Da | 46.29 | 91.88 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 416 | 458 | 7.5705E-20 | - |
| Pfam | PF04564 | U-box domain | 413 | 482 | 2.3E-13 | IPR003613 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1137 | 1167 | 8.9E-4 | IPR001680 |
| SUPERFAMILY | SSF48371 | ARM repeat | 599 | 896 | 5.76E-10 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 407 | 483 | 2.17E-21 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1099 | 1379 | 3.05E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1198 | 1380 | 1.6E-19 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 398 | 487 | 2.4E-23 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 1069 | 1193 | 3.4E-15 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 662 | 914 | 2.1E-5 | IPR011989 |
| SMART | SM00320 | WD40_4 | 1298 | 1334 | 20.0 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 415 | 479 | 3.1E-23 | IPR003613 |
| SMART | SM00320 | WD40_4 | 1129 | 1168 | 3.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1337 | 1378 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1256 | 1295 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1210 | 1246 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1086 | 1124 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1353 | 1380 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1136 | 1172 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1136 | 1172 | 10.759232 | - |
| ProSiteProfiles | PS51698 | U-box domain profile. | 411 | 486 | 36.472588 | IPR003613 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1346 | 1380 | 9.282875 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 499 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06880.2 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037412311.1 | putative E3 ubiquitin-protein ligase LIN [Triticum dicoccoides] | 0 |
| D1FP53 | Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula OX=3880 GN=LIN PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6FNM7 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG031130.