Basic Information
Locus ID:
gene:TRIDC3BG030040
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 248998778 | 249000496 | + | gene:TRIDC3BG030040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 33,246.78 Da | 64.88 | 74.26 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14369 | zinc-ribbon | 9 | 43 | 7.5E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 225 | 265 | 9.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 264 | 7.32E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 269 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 226 | 266 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 226 | 264 | 10.836942 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55530.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037412685.1 | E3 ubiquitin-protein ligase SIRP1-like isoform X2 [Triticum dicoccoides] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077RZX5 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF026900030CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG030040.