Basic Information
Locus ID:
gene:TRIDC3BG029530
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
UBA/TS-N domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 243131308 | 243139093 | + | gene:TRIDC3BG029530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.14 | 34,486.59 Da | 48.25 | 100.00 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01694 | Rhomboid family | 70 | 215 | 3.5E-6 | IPR022764 |
| Pfam | PF00627 | UBA/TS-N domain | 275 | 310 | 2.1E-9 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 259 | 313 | 3.49E-12 | IPR009060 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 32 | 219 | 9.16E-16 | IPR035952 |
| Gene3D | G3DSA:1.20.1540.10 | - | 32 | 222 | 6.9E-8 | IPR035952 |
| Gene3D | G3DSA:1.10.8.10 | - | 239 | 315 | 2.8E-12 | - |
| SMART | SM00165 | uba_6 | 275 | 312 | 4.0E-11 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 273 | 313 | 13.631264 | IPR015940 |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56740.1 | Ubiquitin-associated (UBA) protein. | 0 |
| RefSeq | XP_037412647.1 | rhomboid-like protein 20 [Triticum dicoccoides] | 0 |
| Q9LET3 | Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A077RWA0 | UBA domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF090800060CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG029530.