Basic Information
Locus ID:
gene:TRIDC3BG029060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Pre-mRNA splicing factor PRP21 like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 238446793 | 238449279 | + | gene:TRIDC3BG029060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 46,822.38 Da | 59.16 | 74.46 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01800 | Ubl_SF3a120 | 337 | 417 | 1.36705E-27 | IPR035563 |
| Pfam | PF00240 | Ubiquitin family | 353 | 419 | 7.3E-11 | IPR000626 |
| Pfam | PF12230 | Pre-mRNA splicing factor PRP21 like protein | 19 | 118 | 1.1E-24 | IPR022030 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 319 | 422 | 5.07E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 313 | 423 | 4.2E-29 | - |
| SMART | SM00213 | ubq_7 | 340 | 417 | 1.4E-11 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 365 | 421 | 15.296429 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 319 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14650.1 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein. | 0 |
| RefSeq | XP_037412614.1 | probable splicing factor 3A subunit 1 [Triticum dicoccoides] | 0 |
| Q8RXF1 | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At1g14650 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6FK82 | SURP motif domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG029060.