Basic Information
Locus ID:
gene:TRIDC3BG029050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Pre-mRNA splicing factor PRP21 like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 238371530 | 238373952 | + | gene:TRIDC3BG029050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 86,065.88 Da | 55.44 | 75.11 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01800 | Ubl_SF3a120 | 692 | 772 | 1.94803E-26 | IPR035563 |
| Pfam | PF12230 | Pre-mRNA splicing factor PRP21 like protein | 258 | 473 | 1.0E-60 | IPR022030 |
| Pfam | PF01805 | Surp module | 185 | 232 | 1.2E-15 | IPR000061 |
| Pfam | PF00240 | Ubiquitin family | 709 | 774 | 2.1E-10 | IPR000626 |
| Pfam | PF01805 | Surp module | 67 | 115 | 7.8E-18 | IPR000061 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 37 | 116 | 3.4E-21 | IPR035967 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 674 | 777 | 6.68E-22 | IPR029071 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 162 | 237 | 1.7E-19 | IPR035967 |
| Gene3D | G3DSA:3.10.20.90 | - | 668 | 778 | 3.7E-28 | - |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 180 | 238 | 3.0E-22 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 51 | 122 | 1.1E-22 | IPR035967 |
| SMART | SM00648 | surpneu2 | 185 | 238 | 1.7E-15 | IPR000061 |
| SMART | SM00648 | surpneu2 | 65 | 118 | 6.5E-20 | IPR000061 |
| SMART | SM00213 | ubq_7 | 695 | 772 | 6.8E-12 | IPR000626 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 187 | 229 | 16.455854 | IPR000061 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 720 | 776 | 15.296429 | IPR000626 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 67 | 109 | 16.809361 | IPR000061 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 674 | - | - |
| Coils | Coil | Coil | 354 | 376 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14650.1 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein. | 0 |
| RefSeq | XP_037416627.1 | probable splicing factor 3A subunit 1 [Triticum dicoccoides] | 0 |
| Q8RXF1 | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At1g14650 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6FLI5 | Splicing factor 3A subunit 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG029050.