Basic Information
Locus ID:
gene:TRIDC3BG028110
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 226987383 | 226993226 | + | gene:TRIDC3BG028110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 52,611.41 Da | 39.79 | 77.22 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 161 | 456 | 1.46037E-93 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 204 | 239 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 160 | 197 | 1.5E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 428 | 456 | 0.031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 281 | 3.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 323 | 2.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 154 | 456 | 1.37E-76 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 479 | 3.0E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 418 | 456 | 0.035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 364 | 6.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 406 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 158 | 197 | 3.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 239 | 5.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 281 | 1.8E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 249 | 284 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 290 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 165 | 206 | 15.888781 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 324 | 11.233774 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 165 | 201 | 12.472858 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 248 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 207 | 244 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 431 | 456 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 332 | 14.251289 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 268 | 282 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 310 | 324 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 268 | 282 | 1.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 310 | 324 | 1.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 184 | 198 | 1.9E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15900.1 | pleiotropic regulatory locus 1. Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10. | 0 |
| RefSeq | XP_037412526.1 | protein pleiotropic regulatory locus 1-like [Triticum dicoccoides] | 0 |
| Q42384 | Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077RZL6 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF084900050CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG028110.