Basic Information
Locus ID:
gene:TRIDC3BG027960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 225280881 | 225291111 | - | gene:TRIDC3BG027960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 126,035.47 Da | 44.00 | 78.70 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 487 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 925 | 956 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 348 | 667 | 4.5E-41 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 491 | 1104 | 3.45E-40 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 761 | 973 | 2.7E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 981 | 1134 | 5.6E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 540 | 686 | 7.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 539 | 2.6E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 623 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 835 | 872 | 83.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 530 | 0.0042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 440 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 2.1E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 47 | 105 | 7.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1013 | 1049 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 918 | 957 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1072 | 1104 | 400.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 875 | 915 | 2.2 | IPR001680 |
| SMART | SM00667 | Lish | 17 | 49 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 533 | 576 | 98.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 488 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 453 | 488 | 8.676514 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 47 | 105 | 13.415294 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 17 | 49 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 925 | 956 | 9.783781 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 632 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 925 | 966 | 12.01227 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1143 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_037412517.1 | protein TPR1 [Triticum dicoccoides] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | W5CVN6 | Topless-related protein 3-like OS=Triticum aestivum OX=4565 GN=TRAES_3BF123400010CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG027960.