Basic Information
Locus ID:
gene:TRIDC3BG027460
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
KU70
Description:
Ku70/Ku80 N-terminal alpha/beta domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 218085086 | 218097542 | - | gene:TRIDC3BG027460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 48,715.55 Da | 54.18 | 85.62 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain | 30 | 247 | 6.4E-42 | IPR005161 |
| SUPERFAMILY | SSF57850 | RING/U-box | 359 | 403 | 2.65E-5 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 26 | 245 | 1.0E-29 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 313 | 3.09E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 350 | 3.7E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 27 | 255 | 2.5E-40 | IPR036465 |
| SMART | SM00184 | ring_2 | 268 | 307 | 0.25 | IPR001841 |
| SMART | SM00184 | ring_2 | 360 | 399 | 0.37 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16970.1 | KU70 homolog. Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. | 0 |
| RefSeq | XP_037412478.1 | ATP-dependent DNA helicase 2 subunit KU70-like isoform X1 [Triticum dicoccoides] | 0 |
| Q7F1M0 | ATP-dependent DNA helicase 2 subunit KU70 OS=Oryza sativa subsp. japonica OX=39947 GN=KU70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6MKX8 | Ku domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG027460.