Basic Information
Locus ID:
gene:TRIDC3BG025980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Sof1-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 204359331 | 204368202 | - | gene:TRIDC3BG025980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 52,027.59 Da | 43.54 | 67.94 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 59 | 360 | 1.98611E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 137 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 360 | 1.6E-4 | IPR001680 |
| Pfam | PF04158 | Sof1-like domain | 361 | 446 | 4.1E-28 | IPR007287 |
| Pfam | PF00400 | WD domain, G-beta repeat | 62 | 95 | 0.008 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 317 | 5.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 57 | 360 | 7.06E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 141 | 4.3E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 142 | 388 | 1.3E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 278 | 317 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 232 | 6.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 360 | 6.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 95 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 137 | 1.7E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 285 | 317 | 9.941962 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 105 | 137 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 104 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 96 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 285 | 317 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 328 | 360 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 328 | 369 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 105 | 137 | 12.346452 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 82 | 96 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 7.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 82 | 96 | 7.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 347 | 361 | 7.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 452 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28450.1 | nucleotide binding;protein binding. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_037412361.1 | DDB1- and CUL4-associated factor 13-like [Triticum dicoccoides] | 0 |
| Q803X4 | DDB1- and CUL4-associated factor 13 OS=Danio rerio OX=7955 GN=dcaf13 PE=2 SV=1 | 0 | |
| TrEMBL | W5CZ61 | DDB1- and CUL4-associated factor 13 OS=Triticum aestivum OX=4565 GN=TRAES_3BF062500060CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG025980.