Basic Information
Locus ID:
gene:TRIDC3BG023530
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 170197225 | 170198124 | + | gene:TRIDC3BG023530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 23,012.71 Da | 49.81 | 73.15 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 114 | 156 | 1.0324E-19 | - |
| Pfam | PF13639 | Ring finger domain | 113 | 156 | 4.9E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 164 | 6.31E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 163 | 4.1E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 114 | 155 | 4.1E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 110 | 164 | 0.0083 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 156 | 13.108904 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 190 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037417611.1 | E3 ubiquitin-protein ligase ATL41-like [Triticum dicoccoides] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077RY05 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF157000030CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG023530.