Basic Information
Locus ID:
gene:TRIDC3BG023520
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 170087262 | 170088221 | + | gene:TRIDC3BG023520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 20,408.09 Da | 41.30 | 89.54 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 117 | 160 | 2.02971E-20 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 3.8E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 166 | 4.71E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 165 | 5.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 118 | 159 | 7.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 12.99088 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 196 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037412148.1 | RING-H2 finger protein ATL74-like [Triticum dicoccoides] | 0 |
| Q9SLC4 | RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A077RR57 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 GN=TRAES_3BF157000020CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG023520.