Basic Information
Locus ID:
gene:TRIDC3BG019900
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 137562019 | 137573735 | - | gene:TRIDC3BG019900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 46,732.50 Da | 37.78 | 70.81 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 154 | 435 | 7.18569E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 193 | 227 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 351 | 4.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 234 | 271 | 1.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 403 | 435 | 0.053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 185 | 3.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 151 | 435 | 3.05E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 128 | 286 | 2.3E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 287 | 435 | 5.7E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 188 | 227 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 185 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 310 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 351 | 6.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 231 | 271 | 2.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 395 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 435 | 0.002 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 153 | 194 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 195 | 236 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 404 | 435 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 238 | 276 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 320 | 360 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 404 | 435 | 9.757418 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 238 | 280 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 195 | 230 | 10.970139 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 153 | 188 | 9.177421 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 172 | 186 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 214 | 228 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 214 | 228 | 9.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 422 | 435 | 9.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 172 | 186 | 9.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 65 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_037411916.1 | transcriptional corepressor LEUNIG-like isoform X4 [Triticum dicoccoides] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6FLN7 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG019900.