Basic Information
Locus ID:
gene:TRIDC3BG018020
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 115540106 | 115544764 | - | gene:TRIDC3BG018020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 26,434.55 Da | 32.26 | 98.68 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 16 | 30 | 0.054 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 116 | 151 | 0.036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 190 | 1.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 15 | 240 | 1.59E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 115 | 242 | 7.2E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 114 | 1.3E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 114 | 151 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 30 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 191 | 8.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 70 | 107 | 29.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 121 | 154 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 121 | 160 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 39 | 10.14085 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 138 | 152 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 138 | 152 | 3.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 17 | 31 | 3.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 178 | 192 | 3.3E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_044339026.1 | zinc finger CCCH domain-containing protein 17-like [Triticum aestivum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6EFP1 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG018020.