Basic Information
Locus ID:
gene:TRIDC3BG013200
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 70908586 | 70912916 | - | gene:TRIDC3BG013200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 41,687.84 Da | 52.68 | 78.65 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13424 | Tetratricopeptide repeat | 235 | 309 | 5.3E-8 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 227 | 361 | 4.74E-10 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 135 | 8.84E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 175 | 2.9E-10 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 196 | 376 | 7.9E-16 | IPR011990 |
| SMART | SM00184 | ring_2 | 96 | 130 | 0.0017 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 130 | 11.486073 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 112 | 121 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 72 | - | - |
| Coils | Coil | Coil | 376 | 385 | - | - |
| Coils | Coil | Coil | 212 | 232 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54360.1 | zinc ion binding. | 0 |
| RefSeq | XP_048561767.1 | protein NCA1 [Triticum urartu] | 0 |
| Q9M2V1 | Protein NCA1 OS=Arabidopsis thaliana OX=3702 GN=NCA1 PE=1 SV=1 | 0 | |
| TrEMBL | M8AEQ9 | E3 ubiquitin-protein ligase CHFR OS=Triticum urartu OX=4572 GN=TRIUR3_16903 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG013200.