Basic Information
Locus ID:
gene:TRIDC3BG012000
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Putative zinc finger in N-recognin (UBR box)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 63575552 | 63582379 | + | gene:TRIDC3BG012000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 140,510.91 Da | 47.35 | 88.26 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02207 | Putative zinc finger in N-recognin (UBR box) | 109 | 175 | 2.6E-19 | IPR003126 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 804 | 889 | 5.98E-6 | IPR036390 |
| Gene3D | G3DSA:2.10.110.30 | - | 109 | 177 | 3.5E-24 | - |
| Gene3D | G3DSA:1.10.10.2670 | - | 800 | 893 | 5.4E-7 | IPR042065 |
| SMART | SM00396 | push_1 | 107 | 176 | 2.0E-23 | IPR003126 |
| ProSiteProfiles | PS51157 | Zinc finger UBR-type profile. | 107 | 177 | 10.519621 | IPR003126 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1123 | - | - |
| Coils | Coil | Coil | 1204 | 1252 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02310.1 | proteolysis 6. Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. | 0 |
| RefSeq | XP_037411372.1 | E3 ubiquitin-protein ligase PRT6-like [Triticum dicoccoides] | 0 |
| F4KCC2 | E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana OX=3702 GN=PRT6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FFW3 | E3 ubiquitin-protein ligase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG012000.