Basic Information
Locus ID:
gene:TRIDC3BG008520
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
DDB2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 42662129 | 42667438 | - | gene:TRIDC3BG008520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 55,173.28 Da | 26.42 | 74.66 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 104 | 136 | 0.24 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 104 | 432 | 9.68E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 102 | 431 | 1.3E-87 | IPR015943 |
| Gene3D | G3DSA:4.10.60.10 | - | 9 | 55 | 3.0E-5 | - |
| SMART | SM00320 | WD40_4 | 395 | 427 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 136 | 0.0033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 277 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 0.004 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 180 | 6.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 289 | 322 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 103 | 136 | 9.873505 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 477 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58760.1 | damaged DNA binding 2. Encodes a DDB1a interacting protein DDB2 required for UV-B tolerance and genomic integrity. | 0 |
| RefSeq | XP_037411219.1 | DNA damage-binding protein 2-like [Triticum dicoccoides] | 0 |
| Q84KJ3 | DNA damage-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DDB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FG11 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG008520.