Basic Information
Locus ID:
gene:TRIDC3BG004980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3B | 20229381 | 20234355 | + | gene:TRIDC3BG004980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 69,316.20 Da | 31.99 | 78.03 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 84 | 384 | 1.38333E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 212 | 242 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 292 | 8.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 608 | 637 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 85 | 115 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 565 | 594 | 2.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 61 | 384 | 1.99E-47 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 326 | 637 | 2.56E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 38 | 637 | 7.4E-183 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 371 | 7.4E-183 | IPR015943 |
| SMART | SM00320 | WD40_4 | 512 | 551 | 0.0039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 507 | 0.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 247 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 77 | 116 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 598 | 637 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 164 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 385 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 292 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 205 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 594 | 4.8E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 596 | 8.518333 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 551 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 215 | 256 | 9.773251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 294 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 603 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 84 | 125 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 606 | 641 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 294 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 606 | 641 | 10.258324 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 279 | 293 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18060.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037411040.1 | actin-interacting protein 1-2-like [Triticum dicoccoides] | 0 |
| Q9LV35 | Actin-interacting protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=AIP1-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A077RU32 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF171700060CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3BG004980.