Basic Information
Locus ID:
gene:TRIDC3AG075130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 747502590 | 747503834 | - | gene:TRIDC3AG075130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 10,838.51 Da | 56.08 | 91.60 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 8 | 68 | 4.3E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 6 | 76 | 2.44E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 70 | 2.0E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 7 | 68 | 7.5E-8 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 5 | 70 | 8.9471 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 8 | 67 | - | IPR019786 |
| ProSitePatterns | PS00202 | Rubredoxin signature. | 58 | 68 | - | IPR018527 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01460.1 | methyl-CPG-binding domain 9. Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes. | 0 |
| RefSeq | XP_037470866.1 | WAS/WASL-interacting protein family member 3-like [Triticum dicoccoides] | 0 |
| Q9SGH2 | Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=MBD9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6N2X3 | PHD-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG075130.