Basic Information
Locus ID:
gene:TRIDC3AG074580
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 744724583 | 744726897 | + | gene:TRIDC3AG074580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 47,216.49 Da | 74.95 | 60.11 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 248 | 289 | 9.62983E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 70 | 101 | 2.2E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 247 | 289 | 5.1E-11 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 327 | 433 | 8.3E-40 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 296 | 1.15E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 215 | 295 | 2.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 248 | 288 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 248 | 289 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 144 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037408697.1 | probable E3 ubiquitin-protein ligase RHC2A [Triticum dicoccoides] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453GWD2 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG074580.