Basic Information
Locus ID:
gene:TRIDC3AG073760
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 741198560 | 741205538 | - | gene:TRIDC3AG073760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 91,928.61 Da | 42.52 | 92.78 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 254 | 296 | 3.67028E-22 | - |
| Pfam | PF04564 | U-box domain | 250 | 321 | 2.1E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 639 | 678 | 2.7E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 682 | 719 | 1.5E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 600 | 637 | 1.7E-9 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 327 | 1.06E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 566 | 841 | 9.72E-47 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 323 | 1.1E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 554 | 849 | 3.4E-58 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 253 | 316 | 1.1E-28 | IPR003613 |
| SMART | SM00185 | arm_5 | 598 | 638 | 3.5E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 639 | 679 | 0.56 | IPR000225 |
| SMART | SM00185 | arm_5 | 721 | 760 | 2.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 761 | 801 | 2.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 803 | 843 | 410.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 680 | 720 | 0.23 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 609 | 651 | 12.6524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 249 | 323 | 41.762314 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 732 | 773 | 8.8024 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 691 | 733 | 9.3624 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 449 | - | - |
| Coils | Coil | Coil | 203 | 223 | - | - |
| Coils | Coil | Coil | 78 | 98 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23140.2 | RING/U-box superfamily protein with ARM repeat domain. | 0 |
| RefSeq | XP_037408642.1 | U-box domain-containing protein 4-like isoform X1 [Triticum dicoccoides] | 0 |
| O22193 | U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A453GVK6 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG073760.