Basic Information
Locus ID:
gene:TRIDC3AG071520
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Pre-mRNA splicing factor PRP21 like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 728617495 | 728621797 | - | gene:TRIDC3AG071520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 70,418.68 Da | 58.66 | 72.27 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01800 | Ubl_SF3a120 | 543 | 623 | 2.68335E-29 | IPR035563 |
| Pfam | PF01805 | Surp module | 28 | 75 | 3.0E-17 | IPR000061 |
| Pfam | PF12230 | Pre-mRNA splicing factor PRP21 like protein | 100 | 316 | 2.3E-61 | IPR022030 |
| Pfam | PF00240 | Ubiquitin family | 558 | 625 | 5.8E-11 | IPR000626 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 3 | 79 | 8.63E-21 | IPR035967 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 525 | 628 | 9.44E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 519 | 629 | 2.6E-30 | - |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 22 | 80 | 2.8E-23 | IPR035967 |
| SMART | SM00648 | surpneu2 | 27 | 80 | 2.3E-18 | IPR000061 |
| SMART | SM00213 | ubq_7 | 546 | 623 | 2.1E-12 | IPR000626 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 29 | 71 | 17.10984 | IPR000061 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 571 | 627 | 15.405305 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 525 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14650.1 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein. | 0 |
| RefSeq | XP_037408491.1 | probable splicing factor 3A subunit 1 [Triticum dicoccoides] | 0 |
| Q8RXF1 | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At1g14650 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6ESB1 | Splicing factor 3A subunit 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG071520.