Basic Information
Locus ID:
gene:TRIDC3AG071480
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 728584381 | 728600285 | - | gene:TRIDC3AG071480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.25 | 55,279.32 Da | 60.14 | 63.42 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07002 | Copine | 172 | 377 | 7.8E-64 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 431 | 471 | 3.0E-9 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 149 | 340 | 2.45E-6 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 420 | 472 | 1.2E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 420 | 476 | 2.7E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 434 | 466 | 0.0058 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 434 | 467 | 11.456568 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 128 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63970.1 | Copine (Calcium-dependent phospholipid-binding protein) family. | 0 |
| RefSeq | XP_037408485.1 | E3 ubiquitin-protein ligase RGLG3-like [Triticum dicoccoides] | 0 |
| Q8RX26 | E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EQH6 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG071480.