halophFGD

Basic Information

Locus ID: gene:TRIDC3AG069980

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: Anaphase-promoting complex subunit 11 RING-H2 finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
3A	720832260	720833391	+	gene:TRIDC3AG069980

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.17	29,582.12 Da	62.08	67.11	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	17	60	2.84401E-16	-
Pfam	PF13639	Ring finger domain	17	60	5.3E-14	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	13	67	2.45E-20	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1	67	5.3E-20	IPR013083
SMART	SM00184	ring_2	18	59	1.7E-6	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	18	60	12.636808	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	236	280	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	76	100	-	-

KEGG Pathway

KO Term:

K10664 (E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05200.1	RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).
RefSeq	XP_044354182.1	E3 ubiquitin-protein ligase ATL6-like [Triticum aestivum]
Swiss-Prot	Q8RXX9	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2
TrEMBL	A0A8R7U2I5	RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC3AG069980.