Basic Information
Locus ID:
gene:TRIDC3AG069780
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
CW-type Zinc Finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 718667013 | 718672775 | + | gene:TRIDC3AG069780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 144,414.58 Da | 51.17 | 84.00 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 984 | 1018 | 6.87269E-5 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 662 | 862 | 2.20926E-42 | - |
| CDD | cd18793 | SF2_C_SNF | 1121 | 1226 | 2.10241E-27 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1120 | 1216 | 9.1E-9 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 283 | 904 | 2.4E-105 | IPR000330 |
| Pfam | PF07496 | CW-type Zinc Finger | 508 | 551 | 7.3E-13 | IPR011124 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 686 | 846 | 2.34E-20 | IPR027417 |
| SUPERFAMILY | SSF81383 | F-box domain | 231 | 271 | 7.06E-6 | IPR036047 |
| SUPERFAMILY | SSF57850 | RING/U-box | 974 | 1022 | 1.86E-5 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 270 | 361 | 3.44E-7 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 762 | 1250 | 3.37E-35 | IPR027417 |
| Gene3D | G3DSA:3.30.40.100 | - | 498 | 554 | 1.7E-14 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 674 | 865 | 8.6E-24 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1025 | 1280 | 2.5E-31 | IPR027417 |
| SMART | SM00487 | ultradead3 | 276 | 834 | 1.2E-11 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1134 | 1216 | 6.9E-8 | IPR001650 |
| ProSiteProfiles | PS51050 | Zinc finger CW-type profile. | 503 | 554 | 12.803954 | IPR011124 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 656 | 821 | 10.13184 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1110 | 1254 | 10.374486 | IPR001650 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 232 | 284 | 9.285514 | IPR001810 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 999 | 1008 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 463 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54460.1 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein. | 0 |
| RefSeq | XP_037408400.1 | F-box protein At3g54460-like [Triticum dicoccoides] | 0 |
| Q9M1I1 | F-box protein At3g54460 OS=Arabidopsis thaliana OX=3702 GN=At3g54460 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6H664 | F-box protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG069780.